NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315904_10206037

Scaffold Ga0315904_10206037


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_10206037 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1926
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006181Metagenome / Metatranscriptome379Y
F019614Metagenome / Metatranscriptome228N
F085603Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0315904_102060372F085603AGTAGMNVKIEFHTDNAAFEDSFLMEITRVLARAKGALIDSENTTTIRRPLTDSNGNRIGVVEIAND
Ga0315904_102060373F006181N/AMNATSVMTNNLVHVIYPDEFTAGFIIKTNGEVDPHDVLEMVFAQWNHGSGCESELFVNSKKRSLCVNDIVCVNGRYWQCASFGWNEVTAEYVNELEKAVENHPSREEGAWFALMDVMWERQNIVVA
Ga0315904_102060375F019614N/ASIFTMNAASIATNKIAVTHTAFENREFLTFSVPNGWDDVKKLVNKVLTYEGRDFVHSGWNSDKNECYFIHIKNAPSAVATIH

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