NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315904_10410901

Scaffold Ga0315904_10410901


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_10410901 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1223
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000962Metagenome / Metatranscriptome820Y
F014847Metagenome / Metatranscriptome259Y
F028095Metagenome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0315904_104109011F028095N/AMSEQTYMKLQDKVNRPKLSRENINRENKQFKRVVDQFEQWCVNGGGYETRETYEDDIIDCLFESDTDGYALATFLKEKVYIEPDSELVDILDGVSTIKDSLSKEIIGQWTKENFLEIPSDVIGKKVNAKQGYNKYENHYITGIKPETYEVTISDDINKKGGWVIRYEDITFL
Ga0315904_104109012F000962GGAMNIHVPEEIKNKYPHMEFRGKQRTVNDRTVIEAYNHATNQNFFYSFEEDFFWFPSQIPDYKLPKVS
Ga0315904_104109013F014847AGGMDFENNEEILANTMDCIRNLHEENARLMQEVEQLKEENKELNRKLKSIQAIFL
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