NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315904_10821513

Scaffold Ga0315904_10821513


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_10821513 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)762
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011150Metagenome / Metatranscriptome294Y
F013409Metagenome / Metatranscriptome271N
F098928Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0315904_108215131F098928N/AMKSKIKEVNDLCLANGAYINQHGKKTVSAWSKIRYFREVFGTEFGINTMIVEHSDRYVIVKCLIMGYDPERIIATGY
Ga0315904_108215132F013409N/AMMNGTIHNLGYEIDSYSPRICDKLFDKVTYIGKSSGKNKYGTFYKSKEVFAHSCSIEKTTKGNNEKQNKRS
Ga0315904_108215133F011150AGCAGMCRIMDINFYKKTHYKIMESYRHDIMMRKIKEREDKEFRKLFIKISLIIIAIVLLFTVVF
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