NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315904_11102488

Scaffold Ga0315904_11102488


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_11102488 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)619
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014849Metagenome / Metatranscriptome259Y
F018352Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0315904_111024881F014849N/ALIAIIIALAGSITVMCLFWKQNIEQQKEIRRLRNELRKALKV
Ga0315904_111024882F018352AGGAMGKVKNALMDILTHSDCYGAGWQFVGNAIDYDVWACECNPYNIPADEIQEYHQLFKT

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