NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315294_10004819

Scaffold Ga0315294_10004819


Overview

Basic Information
Taxon OID3300031952 Open in IMG/M
Scaffold IDGa0315294_10004819 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14789
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (74.07%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5395Long. (o)-110.3891Alt. (m)Depth (m)61
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000961Metagenome / Metatranscriptome820Y
F004005Metagenome457Y
F023064Metagenome211Y
F100720Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0315294_1000481919F023064GGAGGMNANEIIDNIKIVADLQYEGEPAQNRLAYHVGLLESHLRGYIQTTEIAQEYIKELQMELVAKESE
Ga0315294_1000481920F100720GAGGMKYPRTMNEAFPRTVEYGAAIEIHVAQHSTADKIIRALALVALIVLALDIFIWRP
Ga0315294_1000481922F004005N/AMTNATQTSRNEQMYGFADIDSYIESVKDSITYKFTGGNMVVAGLMSDAQELIAGGAQDRSRQTLNIAKHILFLIMDGELVSTVERK
Ga0315294_100048198F000961N/AMSDIDLVKYGVLWQKVEDYERRFDDMDKKMSKMENQLEHLVALANQGRGGFWAGMALVSAISSATGYVSHWIGKSN

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