Basic Information | |
---|---|
Taxon OID | 3300031952 Open in IMG/M |
Scaffold ID | Ga0315294_10004819 Open in IMG/M |
Source Dataset Name | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 14789 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (74.07%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Wyoming | |||||||
Coordinates | Lat. (o) | 44.5395 | Long. (o) | -110.3891 | Alt. (m) | Depth (m) | 61 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000961 | Metagenome / Metatranscriptome | 820 | Y |
F004005 | Metagenome | 457 | Y |
F023064 | Metagenome | 211 | Y |
F100720 | Metagenome | 102 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0315294_1000481919 | F023064 | GGAGG | MNANEIIDNIKIVADLQYEGEPAQNRLAYHVGLLESHLRGYIQTTEIAQEYIKELQMELVAKESE |
Ga0315294_1000481920 | F100720 | GAGG | MKYPRTMNEAFPRTVEYGAAIEIHVAQHSTADKIIRALALVALIVLALDIFIWRP |
Ga0315294_1000481922 | F004005 | N/A | MTNATQTSRNEQMYGFADIDSYIESVKDSITYKFTGGNMVVAGLMSDAQELIAGGAQDRSRQTLNIAKHILFLIMDGELVSTVERK |
Ga0315294_100048198 | F000961 | N/A | MSDIDLVKYGVLWQKVEDYERRFDDMDKKMSKMENQLEHLVALANQGRGGFWAGMALVSAISSATGYVSHWIGKSN |
⦗Top⦘ |