NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315294_10031500

Scaffold Ga0315294_10031500


Overview

Basic Information
Taxon OID3300031952 Open in IMG/M
Scaffold IDGa0315294_10031500 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5717
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5395Long. (o)-110.3891Alt. (m)Depth (m)61
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009393Metagenome / Metatranscriptome318Y
F012002Metagenome284Y

Sequences

Protein IDFamilyRBSSequence
Ga0315294_100315001F012002AGTAGMRGVILFLALVTVSVAQDKLILNAQPPPKPKPKQTGCAVQDLYAIAWSTHNPAERHKAMLEWLDKSVCSSADYLIIWNALPEWAGTSDSPLLRAKIIEKAGKK
Ga0315294_100315003F009393AGGAMSTNSQIAFAPLGETVVVPAAATAPTGVQALVNSRLDAQGTGQYRIINNSVYTVFLGVGTTAALATANAVEPISGDPSPAIVLVPGAVEILRFARTSYFSGLASAAATVYIVQGEGI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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