NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306926_10000881

Scaffold Ga0306926_10000881


Overview

Basic Information
Taxon OID3300031954 Open in IMG/M
Scaffold IDGa0306926_10000881 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28975
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (88.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035996Metagenome / Metatranscriptome171N
F051353Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0306926_1000088110F035996AGGMQTVYYSFMRIRLASLLSVQLVFSAAAQNAHPGTATRAAIEDSHEGMTIGVDPWTQSSQYKEKFPKKSPLSGGVVALRVSFRNTSDQSIKVDLQRIRLLVVLDEENRQELEPLTAEGVADTVLLSKENGKDPTTRRNPLPIPVGKPRPSRDANWTNLKDACQNAGVPSSVVAARGTLEGLMYFDLRGEVELLKNAHLYIPNLVTMNDNHPLLYFDIDLGHSSSN
Ga0306926_100008814F051353AGTAGGLTASPRTLRSISCHVRMLVLLLATGVLFFGAGCKKTFQVDDPQLKPIQSMLEEELPVGTPESAVSQFLSMRGYPTEPSDKPGTIVAIIRHIDTEKLQPVTARVTFYFDANGKLNTYEIARTINQPVQ
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