NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308410_1000473

Scaffold Ga0308410_1000473


Overview

Basic Information
Taxon OID3300031958 Open in IMG/M
Scaffold IDGa0308410_1000473 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-MatCore
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21680
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (80.49%)
Novel Protein Genes16 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Associated Families12

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F004024Metagenome / Metatranscriptome456N
F007172Metagenome / Metatranscriptome356Y
F008135Metagenome / Metatranscriptome338Y
F012676Metagenome / Metatranscriptome278Y
F037242Metagenome / Metatranscriptome168Y
F054900Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0308410_10004731F037242GGAGMQEMSVALALCAVAAAVWYMRRREAGAGRVRGWLLLYDDVGGWRVLPASYGDAGVVADGVTYPASLPSV
Ga0308410_100047315F002372AGGGGGMPTRREDVLWSVVHRRASHLRALLDALDDVDMSIAYELHYYPYAIVELLRVRDDAPPVVLRSAYVQANRQWERHSEFTLRVVEEALRLVEWYRADPSMGGAEGV
Ga0308410_100047316F002795GGAGGMAMGSGLVLRGIVAAYREFVSRKDGKLFRVVTVFGDLMVGEVVLCAVDGYDVFVDTPGYARGELVELPARLQFVRDSSGRPAVRLYVDEGVR
Ga0308410_100047317F008135AGGAGGMRAMNDPRTERVLTEAGAGIARVLDARRRHAVALALEVCWYIVAALPPDEELTFGDVVRLLRWFVTGFREADDGDG
Ga0308410_100047318F002229GGAGGMVTLLTLDGVEDVDYVPSDLEIRASLDDAGLYGMVLNGVTWMRLASGSGWWTVIRNRRVTATLAAIGWCWVADGLGARGYWSPALACVPGEVRAMCGDSCVDDDDEED
Ga0308410_10004732F001381GAGMHYVIATLYVFVWLALAAAAALWLPRWALPAALVQLAVAYVMLRSWLTAAAGGDD
Ga0308410_100047322F000642N/AMQEMSVALALCAVAAAVWYMRRREAGAGRVRGWLLLYDDVGGWRVLPASYGDAGVVADGVTYPASLPSVRAGRELIWIARCDAAALIEHCALERARESAALASLWRGGGQWLDLLRVMGVLLPAVFAYFTWAQVSALQALVAQILVLVGDK
Ga0308410_100047323F001381GAGMHYVVATLYVLLWLALAALAALLLPIWALPAALVQLAVGYVMVRAWLTAACGGDGA
Ga0308410_100047324F000855GAGGVDWLEDFFSKVVSWFDERATSIYNAVVAFINLLVDVWNGWMGALLHPAQAMPSVPELRWVVDWLGGIVDYTRLMYMLVDYVAYASIVQQALVAQLTIVFVGLAFRAWLVIRRIVLVS
Ga0308410_10004733F000855GAGGMDWLEDFFSKVVSWFDERAANIYNGIVAFINSLVEIWNGWMDSLLHPAQAMPSSPQLRWIVDWLGGMADYTRLMYMLVDYVAYASVVQQALAAQLTIVTVGLAFRAWLVIRRVVLVS
Ga0308410_100047330F007172AGGAGGMTTPTTLTALQRRAFAAALRAAKQDAYCRQVGGFAIACLSDGTIDWFPLGQPPHRVGEPDRNAVILGKWRWNYQRWSRVA
Ga0308410_100047331F012676AGGAGGMVTIKLAARWDGTPESLTHPEHGWIRFLEARGIAYAAYLSEPAGWRIVVEDEEKFMRLIPKLRKYNIHGIYEWTYDIHP
Ga0308410_100047336F002795GGAGGMATDNRLVLRGIVAAYREFVSRKDGKLFRVVTVFGDLMVGEVVLCAVDGYDVFVDTPGYARGELVELPARLQFVRDSSGRPAVRLYVDEGVR
Ga0308410_100047337F008135AGGAGGMRAMNDPRTERVLTEAGASIARVLDDRQRRAVALAIEVCWYIVAALPPDGSVTFGDVVRLLRWFARGFGRDVEADDGDG
Ga0308410_100047340F004024AGGAGGMRSERDYLRQSSLNDDDMMFLDARATLAAALSRAVVGYSDGRVRALAWLSIATPRLYERIAPIIESSAIRQSPGASRTLRDALRALSLEEYVRRRDERRER
Ga0308410_10004737F054900N/AMSEIYLMICRARGSIGAMEYERAVLQLLVYGVTLFMLYAVDRWYRG
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