NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308410_1002520

Scaffold Ga0308410_1002520


Overview

Basic Information
Taxon OID3300031958 Open in IMG/M
Scaffold IDGa0308410_1002520 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-MatCore
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10472
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056952Metagenome137N
F058499Metagenome135Y
F089597Metagenome109N
F096158Metagenome105N
F098168Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0308410_10025201F056952AGGAGMKRRPSYRLYDVFGNVVYTSSSFRYTIRRLAQSLVKPIIYSAQGRRHVVFYLENGVVKYLLGNFGESRKSVEERVIRLFRASDIARRVRRHV
Ga0308410_100252012F098168AGGAGGMRVRFHSDLVRDRLRAIRSIVREVVLERRIVFVETRDGKLSFSTRSGIAVGEVRFDADDTKIVIVEEGAAAFDANEFVSSIDRAAGEVVEIANGPDRDYIRFAATEYAFPKVAYSDHDRVSVSSSESSVVRFAFELEGIFARTVFASKSSVQSRSRFVLYRSDNDAGGGLIVFSTDEKRYAIVRSRVAADAEAKVLAYLDYDSAALAHSFLDATDERVEVGVDTNGWLVLSGESFRVGLATLSVPNNGHRFLDFDRKFRARVHRAATIPYESFVRAYRSIEPVVSKEWRTIGFEFGESSVTLSATSDLGVSAKSRVDFESIVPANLRTTIYLDSKYVGDFLAAVRSVVSAEALELTKIVFEREEDSKGIVFFGIESDDWRYGMMAISRD
Ga0308410_10025202F089597AGGAGGMPRRLSWGEVAAILDRELVERYGRYLRGVVEGETYVPKATTTPSLVNRTIVLGVIYDWCRRRHRHRPLPATVRAFSWVARYCYPFHPVFARLGIGSEDVVEALEWIANESYSFRFVPAKHAGVLVVGEHKEVERREVHHFAPVHLIAPDIDDRHEVPFDIRMAARYVMEAALRAICVVEDDGSYDEIAIRVTVRDLLEVAAPLVTPN
Ga0308410_10025205F058499AGGAGMPSPLVRYERAYTELLSRYLIGPLAKYRDVAGLRFDAEGVFHLVVPNRHGDLVLYSCPYLDGRIVTEDRIPGRRISLRAAVNHDGWDVAVWAERILLENQFAASEITLPS
Ga0308410_10025209F096158GGAGGMAEVGVHRFVIESTQFAKLERALSVALPAARSLGVDAGIFWLRDSIFAATPYASIGLANFDLELEDAPECIAISQPVARLILYELRSHRVRYLEKIGLVVAYDQVVFTFEYDRNPGVETQSFISRYLGSWRPRLKLREHYELLTAHRICFECELSIKEMRARLQGYRSKINDDAYYGYVAFKYFSNVVWHASISRSLLLAFFEAAKDEDTTFRLAYYGDQRCVVCRAGDVIAILSVID
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