NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308410_1005343

Scaffold Ga0308410_1005343


Overview

Basic Information
Taxon OID3300031958 Open in IMG/M
Scaffold IDGa0308410_1005343 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-MatCore
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6803
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013092Metagenome / Metatranscriptome274N
F022362Metagenome / Metatranscriptome214N
F070715Metagenome / Metatranscriptome122N
F097406Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0308410_10053431F097406N/AMYESRLFHDHCHYGIIAAAITNTFRGSESPTIRVEDIFPDVVEYLERFGVRGDSELPLLTKDDLKSWLAQQKSERVVRASS
Ga0308410_10053432F070715GAGGMRHRFTDEHGREYEVARISFARYHDLRDHGFDLAKWASEALARVVRPDTTTDSVQSQRFDYEEFVRILADGTVFRDRKTAEALLTVLCRDSLARHGVTANEVFESLYGRSIWEAEVAFISRILDFFEGHPIMREILGAALKLLLSKVEASTATSSLTSGTSPATSA
Ga0308410_10053435F022362GGAMIANLLDAVVDALNGPPPAASVTASKTWAHYWVLARETPDVCVVTFVRSERERLSRSRFRFLLDVEVVRARPYVDASSIETVVNDVHLIASRITNQEVLERSGIAYAFESISFSDPLYEIEEVFDESSFVRASITARYAVLEPL
Ga0308410_10053437F013092GAGMNAILNDFFETLLRSRGVRLRLPNGSEIDAVVARRDSQSVSLGVQVAADTTTQCFVVRASDLPAGYWPRVADEIINVATSQRYIVVRAIGGAHATTSSDPYGFLVRVWTRLSS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.