NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308410_1013763

Scaffold Ga0308410_1013763


Overview

Basic Information
Taxon OID3300031958 Open in IMG/M
Scaffold IDGa0308410_1013763 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-MatCore
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3615
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F004024Metagenome / Metatranscriptome456N
F008135Metagenome / Metatranscriptome338Y
F015735Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0308410_10137631F004024N/AHSERDYLRQPSLNDDDMMFLDARATLAAALSRAVVGYSDGRVRALAWLSIATPRLYERIAPIIEASAIRQSPGASRTLRDALRALSLEEYVRRRDERRDR
Ga0308410_10137634F008135AGGAGGMRAMNDPRTERLLVSAGASIARVLDDRQRHAVALALEVCWYIVAALPPDGSVTFGDVVRLLRWFARGFGRDVEADDGDG
Ga0308410_10137635F002795GGAGGMATDNRLVLRGMVAAYRELTSRKNGRVYRVVTVYGDLVAGEDVLCSVDGYDVFVDSPDYARGEVVEFPARLQFARDGSGRPVIKLYVDEGVR
Ga0308410_10137636F002372AGGAGMPTRREDALWQIVHRRSSHLRALLDTLDDIDVGVTYELDFYPYAIVELLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSMAEGV
Ga0308410_10137637F015735GAGGMVVYHHWSVEWHPRDNPPHGLPRVVCIARRAVSDPFAGPGPFPPDIDRAARLWNLVASGGARDHGAGYEVVWRLSVVADDADGDAPPDGAWSDDPVYRARRRLLRWVMCSQCPIPALADHFAVEHFRASPGYFGLE
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