NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308410_1028265

Scaffold Ga0308410_1028265


Overview

Basic Information
Taxon OID3300031958 Open in IMG/M
Scaffold IDGa0308410_1028265 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-MatCore
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2120
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F008135Metagenome / Metatranscriptome338Y

Sequences

Protein IDFamilyRBSSequence
Ga0308410_10282651F002229N/AAEIRASLDDAGLYGMVLNGVTWMRLASGAGWWTVIRNRRVTATLASVGWCWVADGLGARGYWSPALACIPGEVRVMCGCVEDEDGDDED
Ga0308410_10282652F008135AGGAGGMRAVIDPRTERVLTEAGAGIAWALDDRQRHAVALAIEACWYVVAALPLDGSVTFGDVVRLLRWFARGFNEGVEVDDGDE
Ga0308410_10282653F002795GGAGGMATNSGLVLRGMVAAYREFVSRKDGRLFRVVTVFGDLMVGESVICQVDGYDVFVDSPDYSRGEMVELPARLQFVRDASGRPAVRLYVDEGVR
Ga0308410_10282654F002372AGGGGGMMPTRREDMLWQIVHRKSSHLRALLDSLDLVDVGVTYELDFYPYAIVKLLRMREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEVWA
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