NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308410_1031333

Scaffold Ga0308410_1031333


Overview

Basic Information
Taxon OID3300031958 Open in IMG/M
Scaffold IDGa0308410_1031333 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-MatCore
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1958
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056952Metagenome137N
F089597Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0308410_10313332F089597AGGAGGMPRRLSWDEVSACIDRESVERYGRYLRGVVEGETYVPKATTTPSLVNRTIVLGVIYDWCRRHYRHRPFAVVIRAFSWCARFCYPFHPVFARFGIESEDVIEALEWIANDSYSFRFAPASYGVTIVGECQSGDRKEIHYFAPVPLVAPGIDNSNAVPFRLRMATRLVLEAALRAICVVDDDGNYDEIAIHATVRDLLEVAAPLVTPN
Ga0308410_10313333F056952GAGGMKQRPSYRLLDVFGNVVYSANDLRKVVKRLAQSLVKPTIYSAQGRRHVVFYLENGVVKCYVGNFGESRKSVEERVIRLFRASDIARRVRRHV
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