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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031962 Open in IMG/M |
| Scaffold ID | Ga0307479_10000297 Open in IMG/M |
| Source Dataset Name | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 46658 |
| Total Scaffold Genes | 41 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 32 (78.05%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Indiana | |||||||
| Coordinates | Lat. (o) | 39.0844 | Long. (o) | -86.4705 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F016649 | Metagenome / Metatranscriptome | 245 | Y |
| F018762 | Metagenome | 233 | Y |
| F085449 | Metagenome | 111 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307479_1000029714 | F085449 | AGGA | MATGASPSSYRLNSVDRHGKQIDPAVLAAAESVFPKALEYGTNLLGDSAVVTNTLEEVAATVSQLIARRDPPGEPASIRNLPGYVFRAFVRQVNRLKSKELAVLDAAIAGQTLAQRLADPSRQLEMKVLVKECLAQFDFTERDMCWRRLEGFTWDEIGPVHGLSGHAAEVRFRNAVRAVKAKLARSRKPLPPTAQTAQNEQLMPALEADDDKRKT |
| Ga0307479_1000029715 | F016649 | GGGGG | MRDKPLSLVLIVLAFAIFSLAGCVLRHDIAGVWKGTIQASAAGGKEKWQGSAELTLNQNGDALTGTLVFTHPQAGRVQVPISSGIVSKDAVTFSGQSQFPLGGSIEITFHGKVNGTSLAGTTDMTSRGLFGTVTNSGPLSLTKQ |
| Ga0307479_100002973 | F018762 | AGGA | MRQHSRRFVVLSLATAIGLLVPVTAHAFIGTMPVIDWTAVVRIGRQIGISQETLNTLGMYLQQYNRINAGVQEGVSLARGRQLRGILNRVVGSQFPQFQQLQRDFNGVLVDPSTLRGDLELAYGATPSADFPIGRKKRIDAADATATLGLLEASRAELVSQQEELDADDIESRAGVASPGGAAKLSAAANGAMLRSQAYDQRLLARLMRLQALNIARENSIEKEQEQIREGQVTAVSDLVGSMKLSYGLGDFRRQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |