NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307479_10010386

Scaffold Ga0307479_10010386


Overview

Basic Information
Taxon OID3300031962 Open in IMG/M
Scaffold IDGa0307479_10010386 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8647
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005385Metagenome / Metatranscriptome402Y
F006213Metagenome / Metatranscriptome378N
F007968Metagenome / Metatranscriptome341N
F013177Metagenome273N

Sequences

Protein IDFamilyRBSSequence
Ga0307479_100103863F013177AGGAMSLDYPASRIFFNILGGSLTLLSIQLPWMTIYGMYPVSVQSYGVYSVALFWALAGAILSFLSRYGGAMTLVGIIAFVGEPYASLGSARPGLGILIALFGAVFTFAGVRWAIPRSFMRRQEIVGGVLYSVGFLIILTLIISSGIYGGLLSSGAAQLIISAPLLLIGIFMTGLGLKLFLSPERREHGLGVLANTA
Ga0307479_100103866F005385GAGMESRKRRRKRSKRLTSSRYKIRVRYKYHYYRWINTKDYGSFSEIYEKYKDKGYSFWCADLPPEFSSQDGTWTGYRLDGDKTHTASTLKRYGRHKAWVDSAYKFEGKPVILVYNAS
Ga0307479_100103867F007968GAGGMRYILTVDFEDDVDIESFMHFVAYHSKRLKCASKDVFIRLAHEWEKQLVNPHESTNPNGVKKEKKKTLKETNE
Ga0307479_100103868F006213GGAGMPHTIKVERHQNELVVHVALLHGPDAKLPGGVLLHTEGWVDIGYGLKMYLVIGSGNITYHPKQIEEKKSLLQRLFSKKQQPLLEDKGMAS
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