NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307479_10011042

Scaffold Ga0307479_10011042


Overview

Basic Information
Taxon OID3300031962 Open in IMG/M
Scaffold IDGa0307479_10011042 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8403
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000173Metagenome / Metatranscriptome1777Y
F001983Metagenome / Metatranscriptome608Y
F056877Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0307479_100110422F000173GGAGGMKTFEVQLRYRDRNEESVEATVKVDASSLPGAVAKAAREFVKGLDRKQRFDMNKNGLEVTAKLVSSASEPKVETSSGATAR
Ga0307479_100110423F001983AGGAMARKNTWANLALGLVLSFFLTACTDTKTVQENEQLKAQVAELQRENGQLGNNLETVTAARDALTKENEALKAEMRAGKTKRSAKKISSRKRRRR
Ga0307479_100110425F056877GGAGMGLMMQTHEDIHSSLQTKFPAGSRILIVSDDDSDTRQLRAMLSEGGFAFDCAKSLRAGCEAAKTGQFQVVISAPRLKDGTWRRLVDIANHSNLRFEVVIWARSFDLREWAEALENGAFDVLDAVYEQSRVVEAANCALWAAYLKGAGPSPRSLRPSQVA
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