NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307479_10018430

Scaffold Ga0307479_10018430


Overview

Basic Information
Taxon OID3300031962 Open in IMG/M
Scaffold IDGa0307479_10018430 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6572
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008609Metagenome / Metatranscriptome330Y
F010607Metagenome / Metatranscriptome301N
F023559Metagenome / Metatranscriptome209N

Sequences

Protein IDFamilyRBSSequence
Ga0307479_100184302F010607GGAMVKVDRYVVVARFARLFPDPAVFEDQEHLVERYLVQSGLPKEKSFYLYQPEGEVDPVDDSGKPAIASGAASFRFQGKNIMAEFMPNASLTLEYYDFGTGLSSEDHSRLWKKQRIGEMSFQLRDFRHETQGLGLTNVSELYEMMKKQSQTTSLSSIELGKMPEDAFQLTVAYLKSQLRKSAEQDGLEVEVYAARDLSASEKSSLEKRLTRESTDSTVYVILSKTSQLMKIETM
Ga0307479_100184304F023559N/AMASPKKRIPKPDLSKYDQSPLYMYTEKDSLNRVTVLKETAKEIYLIAGRYSGVEGDARLYTPLTDEEKGEIERNLRGSHKDALINHL
Ga0307479_100184305F008609N/AMKRSFLVVGMILLVLGIAGYYVTSQTNLIGGRTHTTYPFGGIALAVLGALIAVGGVMMGQGGAKTSNQFKCDKCGATFGSQAALDQHSKDKHKM
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