NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307479_10045698

Scaffold Ga0307479_10045698


Overview

Basic Information
Taxon OID3300031962 Open in IMG/M
Scaffold IDGa0307479_10045698 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4207
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001603Metagenome / Metatranscriptome664Y
F011546Metagenome / Metatranscriptome290Y
F032415Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0307479_100456981F032415GAGMMPISGTAVRRCVALASLALTAGFAFSCASVNNLGQNLGPLEPADLCKCTPLDQGIEYRHGEKHVPIPTMPPEEVTIDTIYSWPQNDPGSLDPPRTGVELQVFHVAVAFVQEVSLNSEDCDIHVEISETADKTARRVIVETPVDSEYCSARQNLQAQLAKHGVKLDPTHGGELPQALPADVVGLAFLDFDHNAIGLGRGSAQVGTLWEIHPAIVNLAP
Ga0307479_100456982F011546AGCAGMKVLDEIRKNGPRPAQIAATKHEDLLMRTSMYHGGSGTEAYLRVVCSMAKADKPEGYTEMLKKLLVPTFEEQLKKGVATYYGVDEQYVNTSAPSTRCLVITYPNAEGMDKWATAINTTMSKWSSTERAEFAGATVPDSRRDILARITHSGQKNS
Ga0307479_100456985F001603AGGAGMFTGTIQRAETNKRKTSVQQLLSFLVLSVFALTIFAGKTHAQIIGDLDVDIPFQFHAGNTRLPAGKYRIHVLDGSDLTVMEIMSADGSTSALFEVQDAEANATPAKSELIFNKYGNRYFLAKLFDEGNPSGSQVLKSRYEAKVSQAALEAQEHVPTHHRTQQKN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.