NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307479_10127298

Scaffold Ga0307479_10127298


Overview

Basic Information
Taxon OID3300031962 Open in IMG/M
Scaffold IDGa0307479_10127298 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2489
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018334Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0307479_101272981F018334N/AVQVAELNVPVELVVNVTVPVGVIAPVPEESATVAVQVLATLSRTLAGEHATVVVLVRRVEASTKLPLLPLWLESPP
Ga0307479_101272984F018334GAGGVHVVDENVPVLLVVNVTVPVGVTAPVPELSATVAVQVLALLSGTLAGEQATAVVVARFVEARVKVPLLPV
Ga0307479_101272986F018334N/AVHVAELKVPVLLLVKVTEPVGVTAPVPEASATVAVQVEATLSKTLAGLHETVVLLARIVEARVKVPLLPV
Ga0307479_101272988F018334AGGVPDARVHVAELNVPVLLVVNVTVPVGVTPPAPEASATVAVQVLAVLSRTLAGEQATVVEDARIVEASVNVPLLPV
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