NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307479_10136927

Scaffold Ga0307479_10136927


Overview

Basic Information
Taxon OID3300031962 Open in IMG/M
Scaffold IDGa0307479_10136927 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2397
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001619Metagenome / Metatranscriptome662Y
F026085Metagenome / Metatranscriptome199Y
F035232Metagenome172Y
F058741Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0307479_101369271F058741GAGMDLYRTAESWSGLPGAIAPADGNLAAGVAPGFSPAARDRGEDAALKGGATTPPVDLGPNNERLDEVKPELVNALRELVRQYRQEGVVARRHEIRRIRQARLFWQGLQYAWWNPNDMNWHLPFEQRFSDDRELEEMPRYQFVTNFY
Ga0307479_101369272F001619N/AMFEKLKQFWRPNYVRLLEEEVSRLRAENRALLNSLLGTAGFPPLEFAETPQPQPLPRLRKRSWHQLQAWRQTEARRDASANLD
Ga0307479_101369273F026085AGGAGGVEKPLWEQQSFPEKLFRLIVLLCIVGWGISIIYVVSHVGPLEEPPTRSRDLASFFFTAALIFIFFYAQYRVVPRFLHRDLDRRVGLWHASGSLTLLIIGALNAASPQGGMDVPSTFLFWMALLGEAVFISNVIWSYVHGKTEVPFLPVVPRAKTTPGRIADDSAKNMGCPKSPAKLFGIAAAVFGAGGIVSLILNVPSYPIPVPWSGQVHFLPFGYMWLAAAAPFALFAMLYKFLMDDQRLVFEESLNRIHFVVTIIAILDVVRVFMSWQQAMVSKLAELYFGPEFEWLGVLFGMSAVVFAINAYRSYRRAAVRT
Ga0307479_101369274F035232AGAAGVEGDDPADAARYGLVSGGRLAGVVGRVAPGFSPAFAPNAALKGGATQPRFVTGMPLGEQIARQVTAADPTSRAIHFQRLQGEAKKQSRPKPLPRRR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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