NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307479_10155764

Scaffold Ga0307479_10155764


Overview

Basic Information
Taxon OID3300031962 Open in IMG/M
Scaffold IDGa0307479_10155764 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2242
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → unclassified Thermoproteota → Crenarchaeota archaeon 13_1_20CM_2_51_8(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028131Metagenome / Metatranscriptome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0307479_101557641F028131N/AVPEPARLFGVIAPQVRFVGTASVRLTVPAKPFTAATVIVELVELPTLTAAGEVAAIVKSETVNVAAALCERVPLVPVKVTK
Ga0307479_101557642F028131N/AVRVAVPDPTTLPGEMGPQLRFPGTVSVRVTVPANPLTAVTVIVEVAEAPALAAAGEVAAIVKSATVNVAVVE
Ga0307479_101557644F028131AGTAGVELHDTVAVPELIMLAGLMEPQVRLAGTVSVSPTVPVNPLILATVTVEVAEVPTVTAAGDVATTEKSVTVNTVLVE
Ga0307479_101557645F028131N/AMLPGVIAPQERFAGTESVRVTVPVNPLSAVTVTVELALVPAWTSAGEVAAIEKSLTVKTVDVEWDSAPLVPVIVRV
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