NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307479_10294699

Scaffold Ga0307479_10294699


Overview

Basic Information
Taxon OID3300031962 Open in IMG/M
Scaffold IDGa0307479_10294699 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1604
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001619Metagenome / Metatranscriptome662Y
F054194Metagenome / Metatranscriptome140Y
F058741Metagenome / Metatranscriptome134Y
F098736Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0307479_102946991F098736N/AAGQAPPFYSPANAPHFVTGMPLGEQISRQISATDPTSRAIHTQRLEAEARKQFRPKPLPRRRW
Ga0307479_102946993F054194GGAGMSPRANRQKISTTIAPENQAFLKSLIKRGKASTLAEAVDRAIGVARRAENRKRLEEATTAYYASLSGDALKEEQELEKAVAYEASQVDFDAE
Ga0307479_102946994F001619GGAMKDFLQRLFRGRYVGLLEADVARLRAENRALMNSLLGTAGFPPVEFPEAPKPQPLPRLRKRSWHQLQAWRETEAHRDTSASFDERAFERTNGPAPHS
Ga0307479_102946995F058741GGAMPGAIAPADGNVAGVAPVSSPARLSPSYGNEMRQQDAAATDTPVDLGANNERLEDVKPELVHALRELVRQYRHEGIVARRHEIRRIRQARLFWQGLQYAWWNPNDMNWHLPFEQRFSDDRELE
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