NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307479_11038472

Scaffold Ga0307479_11038472


Overview

Basic Information
Taxon OID3300031962 Open in IMG/M
Scaffold IDGa0307479_11038472 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)787
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017385Metagenome241Y
F018787Metagenome / Metatranscriptome233Y
F099605Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0307479_110384721F017385N/AYLLLDPRAGTPRQRWQWLLALLAAAERDAWLRGLEDVHAWLPPPIAAKFGKRLARLGWLRDDTWTPYCKKLGSRD
Ga0307479_110384722F099605AGGAGVPNTTQSASWDFNPSDPVRLAATFSFDTEDTQDAAPVATALAAIQARLASASLTATQPDGATISITVTI
Ga0307479_110384723F018787GGAGGMGRGAQAQTQQLTDQQLASINALNQQLLGNQQQLGNSLVPQFQSIANNPGLS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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