NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315901_10030628

Scaffold Ga0315901_10030628


Overview

Basic Information
Taxon OID3300031963 Open in IMG/M
Scaffold IDGa0315901_10030628 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5503
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039637Metagenome / Metatranscriptome163N
F053244Metagenome / Metatranscriptome141Y
F057377Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0315901_100306283F053244N/AMRLGLTLTRTGNTWKVESLPSVPLADQLAAFKAKQVAGELTADETLVVSLGDTLKRHLCKAKPAPAVEVEAEESPKPKKK
Ga0315901_100306287F057377N/AMTKPLAVFSTRDLKLATILLTLGFEAENPAAPATRIRRDSGDETTVFHFLANHPTSGQQANQVMEWFRDADIFLEKNPEHPVAYILAALRNRDTLVSVVKATPRQLVFERNGKIVSISENATEADKKRFAKFL
Ga0315901_100306288F039637N/AMKNKNDKSTANETLETDDEALREAAMRDGTKRVGKFKLRPCVPGTISIIRSNLLEKRDEFWFVAAFAFVHSAPLEDVLAVDSDPEEFNRAVRRWQLENIADLDDQNELSKLVSAAWDRVNAAETKAKHPSTGSPTSGE
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