NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315901_10203415

Scaffold Ga0315901_10203415


Overview

Basic Information
Taxon OID3300031963 Open in IMG/M
Scaffold IDGa0315901_10203415 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1713
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066470Metagenome126Y
F075715Metagenome118N
F075748Metagenome118Y
F093236Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0315901_102034151F093236GGAGGVKTRHLQLVTSEHSVTMGARESVPSPYGPVRAGLTTSPITQDQRLSGLLSSLESVVENLNYKSFTLYDMLNTAIEEISAVLSNTQTEEDGTDADGS
Ga0315901_102034152F066470GGAGGMEISRRIESAKRSAVGYRNYRRARDRAMTRLSNAYPETYKELLEQEKIVDEQMGKKWLDIDGSTDQYMDTNSDTSPTGGREGDQASTGSDQSNDGGKA
Ga0315901_102034155F075715AGGAGMNKEYLAAKADLCKDLAIEQLTAGNSEEGVKNLKRMIRALEEINLINYLEERRGRE
Ga0315901_102034159F075748N/AIDSTANFRAYIEDIDSLDGQSLDLVTQVIGVDGQEWTDEECLEIIKEIIDLSSAYRNTHKWNNG
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