Scaffold Ga0315901_10357960

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315901_10357960

Scaffold Ga0315901_10357960

Overview

Basic Information
Taxon OID	3300031963 Open in IMG/M
Scaffold ID	Ga0315901_10357960 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1185
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.7464	Long. (^o)	-83.3444	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F055450	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315901_103579605	F055450	GGAGG	MEANNKRLVGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKKTDEQEGKTWLDLDGNTVPVVGVRIRTADGRGRPVIKDTIRKGKNKGNNGGEA

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