NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315901_10565023

Scaffold Ga0315901_10565023


Overview

Basic Information
Taxon OID3300031963 Open in IMG/M
Scaffold IDGa0315901_10565023 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)872
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F012862Metagenome / Metatranscriptome276Y

Sequences

Protein IDFamilyRBSSequence
Ga0315901_105650231F000258GGAGGVTADYKLDAMLELRKYLWKELYTREIFNEEDYWSDNLNENIVPIIPVQQAAEMNQFLSWKKHIVYDKIGLSYEDNWLICCEQIMFTLYSTSVADINEIRNYMTDEFRRMDESARDINKWTGLSNKFKFHSIWVADISPTAPSEELQGFFSAEVILEVKYSRIT
Ga0315901_105650232F012862N/ARRRHMFVNKASVMEEGKPLVIRPKNAERLVFEIDGETIFMPKGQSVTVRRPGGSASTNQFTLAHSRFFSGNLINASIKNSGFQRIFNSSITKALRVPNNIKKVQYSFSANAIRSQADAALVASFGGAM
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