NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315901_10861847

Scaffold Ga0315901_10861847


Overview

Basic Information
Taxon OID3300031963 Open in IMG/M
Scaffold IDGa0315901_10861847 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)649
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001190Metagenome / Metatranscriptome753Y
F018836Metagenome / Metatranscriptome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0315901_108618472F001190N/AMTASVPTGQSGTEDYFDIDKFQQLLDKLEGSKGRQKRQESLESRRNIFAQGLASMMSNF
Ga0315901_108618473F018836GAGGMTSSVPTGQTDVDDWFDLDKYKQAAEVAYSFSKKKLEDTGAQERETIGKGAQEQRTSAEQAQQFKQSDEARDYG

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