NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326597_10044052

Scaffold Ga0326597_10044052


Overview

Basic Information
Taxon OID3300031965 Open in IMG/M
Scaffold IDGa0326597_10044052 Open in IMG/M
Source Dataset NameSoil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5618
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)42.9888Long. (o)-108.3994Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063430Metagenome129N
F068627Metagenome124Y
F068642Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0326597_100440526F068627AGGCGGVSVGERKAPLRLENSPTTEGAIEPLLTAAEVGRLLAIPTKRVYEVVGHLAIQLAPHTLRWQHSDIMAHIDARRRSR
Ga0326597_100440527F063430GGAGVGRARPDLITVLEENPPGPNAGITLVRRVRTREYRTEIGPRGYLSQIEAAAFLGKSVMAVNRYVRLGLLRDTTRCGISTIQLAELRRFRREYLEGGKGGRLRRGAGRARRKA
Ga0326597_100440528F068642GGAGMRVRSVLRMPEALRRHNEEQRRDPEDVVSDLSRRVRVVVLWRQRDDDPERWIYLERMVPGEFSYETVKQRWGGGAYRIRLFGAWDRSRRQERYITQVAFWIHRGFPPTPALRARLRAAATVDGGSEPGLRHLN
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