NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308420_1000317

Scaffold Ga0308420_1000317


Overview

Basic Information
Taxon OID3300031966 Open in IMG/M
Scaffold IDGa0308420_1000317 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23004
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (87.88%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Associated Families12

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F004307Metagenome / Metatranscriptome444Y
F005028Metagenome / Metatranscriptome414Y
F006252Metagenome / Metatranscriptome377Y
F007976Metagenome / Metatranscriptome341Y
F008499Metagenome / Metatranscriptome332Y
F016404Metagenome / Metatranscriptome247N
F048124Metagenome / Metatranscriptome148Y
F051735Metagenome / Metatranscriptome143N
F074922Metagenome / Metatranscriptome119N
F076715Metagenome / Metatranscriptome117N
F087842Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0308420_100031710F076715GAGGMWWKIEPIPHQELEDWERALLRCENRAKRDPMSRAAGVFVIFVREGGTRPEYAPGDKAPDGAYLVGKWTLKKKGWMWYE
Ga0308420_100031716F048124AGGAMATISIWRGYRHWNWDEENDYEVVTYEDARELGAVRFNDEEADIQYRIIEWDENIVVFFVERKGHYVEAEIYEYPSLEEAAKEYRFVLKKAGVIQ
Ga0308420_100031718F002982AGGAGGVKLQFERHPHAVCAVLTDAGECDRIINVARASDAIDALALDINAAAFTPLDALFALPRVVCVEIERRAGGWRVEVAYWNGALGTLAQYETDAATLSEALARCVWALAR
Ga0308420_100031719F087842AGGAGGMITIWGGYIAAGDARVYLISFDGERIGGMSERNVQRTFYRVHDGRVVVHEVRIGRRRGGITYDQALVYVFSSITEACAHLAVNPQHIAQTRGDAALPSVEAPTLTPDEWARGVGTY
Ga0308420_10003172F006252AGGGGGVRSFDEQAAFGLPYERLIAQAAALLLYPQRLDLTLVRLDAYAPLDFLIVDGERPVAALEVKRRSIRSDTYRTTIIPQSVVDAARRLTIPVYAAILFTDGLAVFDVLRTPSTARWLRTRRGALRKHREYDISERLVKVEEVHQRQRRSA
Ga0308420_100031721F074922AGTAGMLAQFLNVALDVQTPAYAGVRVANGTLVASDGVVLVAYRLNSEYIRGEGMIPPATARALAALANEVYLDYIEVDGTAVSLVTREQYEDRSERLVVTFPPFACYTLCIESFLPRCTPPDATLLCEAPSLKLVKAARSNDFVELVDNPVRGSELFQLKLPDAKVWYSVRQLREGLRLFRARDTVSVFWNEQGWLAFRDDWGRLFAVTPYVKRD
Ga0308420_100031722F007976AGGAMPSSELARFLNVAIDVQAQPFPGIHVADGVILATDGVMLVAKKFDVVFMRGEGAISPKAARVLEALAEATWIGSVAVVGNRVTATAQTTRYDEQLGAEVAGGYREIELEFYCPRAPVARMLGVLHDESRGWQQIVENPNLKALKEMSARDYVALIDNPRNGGELFRPKEIDDPHWYSVAQLRRGLRLFGARARLSVRRNAKGWLAFEDGYGHTFAVTPFVKHN
Ga0308420_100031725F051735AGGAGGMFRDVTIINGPVPKDGVADYERLRIKARPLGRPYTWDNGRAWNDYTTNGGVAIVFEAKDGSIYIQEIEWEVDPYPDATPDPRTYYYYEVYNSLDEARAGWRGWLIEYALGNE
Ga0308420_100031727F016404N/AMTTEELLTDEARAAVLRALFMIVVNDSEPASARVAAARLFLSQFDEQPNAERDVLVIVDETAFVKTV
Ga0308420_10003175F004307AGGAMFKELIHNGNGRERPQLNGAYIGRFLGVKERQRSTFETRLSPEPELEDVFVFEFEVEDDDGNPLRVSKWVRKPKRLTHPNGGKVTNLYKTLAALYGVSVMTDEQLNAAEEFVQSAVGREYQLTIETKPSGWYEIVHIAPVRARLRKTKEDEVPF
Ga0308420_10003176F008499N/AMKSRSKSEPRWKRKERDALRALQAIFGRVSDPSLARLLSSTGRVGHLTRFGVDGFVGDNPGFAVEVKARRKMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKERKDE
Ga0308420_10003178F005028GGTGGMRDDDLRAAMSFFAARLRGAELDETRLLRWTRHKLRNDAQAVAELMLTVGYRPTFIRYFLRYHIPALRESAAVGETYIDPDAAAEAHLGLCWRLDENVVAVLSDLHTTAKRLRQPYRDLAAVCLRWGYVHETVVQMLAKALERK
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