NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308420_1001031

Scaffold Ga0308420_1001031


Overview

Basic Information
Taxon OID3300031966 Open in IMG/M
Scaffold IDGa0308420_1001031 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14431
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (90.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004791Metagenome / Metatranscriptome423Y
F005302Metagenome / Metatranscriptome405Y
F007976Metagenome / Metatranscriptome341Y
F030445Metagenome / Metatranscriptome185N
F105262Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0308420_100103112F105262AGGAGGMLVQETIQPLLRYFNAAASGADTPVVSIANAQAVRIVAHTGTVTDTASLQVHVNDTNNTNNSTQLTDKGIATLASNRTYEIFVTGAEAYAAKTHASHMFVRIAGTGTAQIAIEISAFPGRDIPATLPTGWTRVL
Ga0308420_100103115F005302AGGAGGMSHSGVIAGLYAGNFAVEISTDNTTWTAVSNANVKIDDVELSRPSGEAYVGGSSDYATVTVGKREPIEITLTFLYNEDTNSAANTIFDQFQSASPRLGVRWSPRGLVGSARAYGTSNDGGTSFGLGVITNVTLSALDPSDAEPYVAMVTVRTPSLRRYTLGSSPTNLNPAP
Ga0308420_100103116F004791AGGAGGMTTPAEIYDIEAIRVDRNALTIREATSVLNNELTAPVVARLVRKAIGDQADRFPLRALKAVYERVLPQIFEPNEAVRSRVAGLVPAVGEITLGEYHEFLDASERKVAFPEVAKTLLVKAYGEGVLEEPYAAAALLLKKIFDAIGDEGNE
Ga0308420_10010312F007976AGGAMSSTELARFLDVALDVQAPPYPGIHVDFGLMVASNGVMLVTKRFDDKVFLRGKGAISPKAAKVLVALVEATYIGSIEVNGNRMTVTAQSTWYDEKAGAEVAGGYREVTLPELYCRQIPIKRMVEVLDDKALGWEVLPLSSNPKLKTLKEANAKDYVALVDSPHGGYELFRLRNIDDAHWYSVAQLRCGLRLFGKHSSLIVRRSKDGWLAFSDQLGYTFAITPFVKRD
Ga0308420_100103120F030445AGGAGMLIAITKPHQQFPVSLTVADYEFSTSDDGDERGRVTLPPTFARSGVMTQIGDELIVYCTQLSKTIWRGQIERIEEARDGSITWHALGFGALQRDARISVVRNMTDMKKWKPVGEGVITNS
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