NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308420_1007035

Scaffold Ga0308420_1007035


Overview

Basic Information
Taxon OID3300031966 Open in IMG/M
Scaffold IDGa0308420_1007035 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5454
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rubrivivax → unclassified Rubrivivax → Rubrivivax sp. SCN 71-131(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F007976Metagenome / Metatranscriptome341Y
F010840Metagenome / Metatranscriptome298Y
F031016Metagenome / Metatranscriptome183Y
F048124Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0308420_10070351F048124AGGAMATISIWRGYRHWNWDEENDYEVVTYEDAREVGSVRFEDAGSDIQYRIIQWDEGIVIFYVKREGHYCEAEIFEYPDLEAAAKDYAFIL
Ga0308420_10070352F031016GGAGGMDTIRIWSGSRRVVCGEDYEFVKYEEFEGETLGACWEEENSRGTQTTFYRTHDGRIVAHVVRWSRWEGEATHAYIHVFPSLDGVNGAAAMFWWELENAGIIPPLTVGLDE
Ga0308420_10070355F002982AGGAGVRIQFERTPTAICAVLTEPGECDRIISVDRASDAFRAFGIFTRDVAPAAYKPLDALFSLPRVVCVEIEQRAEGWRVEVVYWSKGLGTLAQYETDAATLAEALARCVRTMTGQ
Ga0308420_10070356F007976GGAGGMPSVELSGFLRVALDVQAPPYPGIHVDFGLMAASNGVMLVTKRFDDKVFLRGKGAISPKAAKVLVALAEATWIGSIEVNGNRVTVTAQSTRYEENVGEVASGYCEVRLPEFYCRQIPIKRMVEVLDDKALGWEVLPLSSNPKLKTLKEANAKEYVALVEDPRSGEELFRPKTDNDAQWYSVAQLRRGLRLFGKNSRLSVRRNSSGWLAFGDQWGYTFAITPFVKRN
Ga0308420_10070359F010840AGGAGGVNLPFSQPLDKITYGAFAAATVVIFAWALREFAGIDLPAEVQSALAVIFGYVVSYYIPLNETEAEAIARKYYKYK
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