NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308420_1020718

Scaffold Ga0308420_1020718


Overview

Basic Information
Taxon OID3300031966 Open in IMG/M
Scaffold IDGa0308420_1020718 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2785
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060638Metagenome / Metatranscriptome132Y
F069556Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0308420_10207181F060638GAGGMEWLEDFFSKIVGWFDQISASVHNATIGWINGLIDIWNGWMDSLLHPAQA
Ga0308420_10207185F069556N/ALPYLTPVAVSLADRWSEVAGADWRADVRQVARDGVAAVARYLTTDGVAGAAFETASPAAKIPAGRSYPEILWDYARYRSSADAALIYEYAAALHGVHHLTVSPRLRRLYDFVDPALDWSEIVDEDVIALLNSEEWLSILNAGEERNLLDDLSRSW
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