NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308420_1035025

Scaffold Ga0308420_1035025


Overview

Basic Information
Taxon OID3300031966 Open in IMG/M
Scaffold IDGa0308420_1035025 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1954
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028964Metagenome / Metatranscriptome190N
F061432Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0308420_10350252F028964AGGMIGAEVTLALTSLRQPGTRTGAIALGGSFERRAMEVAECELEIRAHTPSYDLSAYGDVLLVMLPDRREYYFVTAIERRNTYYVLRGETFLRYLRDYYPERYAGTSDAQWNGDAAAGVLRSLRPIEYVPVHSFAGSFRDYWIITPDNVPPSVTVNTSFAWASRLEAAQEITRLAHAQGFPLVWWFECGRWCAAKDATGNYGVEPSIALVFAHGLPRNGLFRPRWASSIKYEAWVYDRSQPTAGVALGYGHGQDRDVTRARAARGLFNGWTYWEGRLDGRATGTSAAAQAALMRWRPVEAGSGQAYSQAMPRLGDQVFLVAGDHQRCAGIAHVVSERYVVTGGQVSSAEVGVVQI
Ga0308420_10350253F061432AGTAGGMNSERIDLLERGDSFAPATANVLWFGSVNVPANSNVTLPISGLSELTGNIFEHVPAAQALRIKQAGIIGYQVNVVCNSTGVGNLSVLLRQASPLHEWGLAVQPYYLHSNFAFATGGARLVNVPSGGANYQIYVVNSGGTGSFTLQTVGIRLVYLGRR
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