NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308420_1047503

Scaffold Ga0308420_1047503


Overview

Basic Information
Taxon OID3300031966 Open in IMG/M
Scaffold IDGa0308420_1047503 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1584
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005028Metagenome / Metatranscriptome414Y
F008499Metagenome / Metatranscriptome332Y
F032180Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0308420_10475031F008499N/ASGRRKKMKSRSKSEPRWKRKERDALRALQATFGRVGDPSLARLLSSTGRVGHLTRFGVDGFVGNDPGYAVEVKARRKMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKERKDE
Ga0308420_10475032F005028GGAMRKRDNDLCNDDLRAASQFFAERLRGADLDESQPKESDETQSPAEGLIDARLLRWTRHKLRSDTQAVAELMLTVGYRPTFIRYFLRYHTPALDEGAAVGETYIDPDAASDAHLGLCWRLDDAVLTVYSDLHAAAKRLRQPYRDIAAVCLRRGYVHETVVRLLAKTLERKPRNVVED
Ga0308420_10475033F032180AGGAMWWKIDPIPHQELEEWERAVGRFERAAKRDVAVRAAGAFVIFVREGETRPEYAPGDKAPDGAYLVERWVRKKKGWTLYE
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