NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308420_1056408

Scaffold Ga0308420_1056408


Overview

Basic Information
Taxon OID3300031966 Open in IMG/M
Scaffold IDGa0308420_1056408 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1405
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F092113Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0308420_10564082F002372AGGAGMPTRREDALWSVVHQRSAHLRALLDSLDMVDIAVTYELDYYPYVVVELLRVREDAPPLALRSVYIQSNRQWEYHSEYTLRVVEAALRLVEEYRSDPSLGGAEAVWA
Ga0308420_10564083F002795AGGAGGMPVTSGLVLRGMVAAYREFVSRKDGKTYRVVTVYGDLVAGEDVLCQVDGYDVFVDSPDYSRGEMVSFPARLQFIRDASGRPAVRLYVDEGVR
Ga0308420_10564085F092113N/APYADDVLVERYRFALRLSDWYGVYDTLYGASAGDTLAILPAPAPALARRRA
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