Scaffold Ga0315914_1002731

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315914_1002731

Scaffold Ga0315914_1002731

Overview

Basic Information
Taxon OID	3300031967 Open in IMG/M
Scaffold ID	Ga0315914_1002731 Open in IMG/M
Source Dataset Name	Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - elongated nodules
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	26930
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (26.92%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Nodule → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	34.06	Long. (^o)	-118.44	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005734	Metagenome	391	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315914_100273126	F005734	N/A	MSVYYIRHLYIHIMFKKCQKHVKIISIKDQKQNKFFCEDKNIKFNFIETKIKIRYIYRNEKFI

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