NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308403_1000874

Scaffold Ga0308403_1000874


Overview

Basic Information
Taxon OID3300031980 Open in IMG/M
Scaffold IDGa0308403_1000874 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10186
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002978Metagenome / Metatranscriptome516Y
F063723Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0308403_100087415F002372AGGGGGMPTRREDALWQIVHRKSSHLRALLDSLDLVDVGVTYELDFYPYAIVELLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADLSMGGAEGV
Ga0308403_100087417F002229GGAGGMVTLLTLDGVEDVDYTPSDAEIRASLDDSGLYGMVLGGVTWMRLSSGAGWWTVICNRRVTATLAAVGWCWVADGCGARGYWSPALACIPGEVRALCGGCAEDEDEEAGDGDE
Ga0308403_100087418F063723N/AVWDEVQVSLDSREWASEAARCLTRDMILWGKRGVICVYTSPSFQTVDVRLRRLTQYVYVTAGRYRRGGADYAVYRWHEHPYADDVLVERYRFALRLDAWYGVYDTLYGASPGDTLAILPAPAPAPALARRRG
Ga0308403_10008742F002978GAGMRDWRVTIVPWADRRLWFVQARRGRRVVWGVVYDAGDPDSVALARRAIATLRAAGADCSALPAVLPGFPGAPGA
Ga0308403_10008743F000642GAGGVQTISIALALCAVGAAVWYMRRREAGAGRVRGWLLLYDAVGGWRVLPASYGDSGIVADGVTYPASLPALRAGRELIWIARCDAAALIEHQALERARESAALASLWRGGGQWIDFLRVAGVVLPAVFAYFTWAQVASLQSLVAQILALVGK
Ga0308403_10008745F000855GAGGMDWLEDFFSKVVSWFDERAASIYNAVVAFINVLVDVWNGWMDALLHPAQAMPSSPQLRWIVDWLGGMADYTRLMYMLVDYVAYAGIVQQALAAQLTIVTIGLAFRAWLVIRRIVLVS
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