NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308403_1001382

Scaffold Ga0308403_1001382


Overview

Basic Information
Taxon OID3300031980 Open in IMG/M
Scaffold IDGa0308403_1001382 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7619
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002978Metagenome / Metatranscriptome516Y
F007172Metagenome / Metatranscriptome356Y
F012676Metagenome / Metatranscriptome278Y

Sequences

Protein IDFamilyRBSSequence
Ga0308403_100138210F007172AGGAGGMNTLERRTFAAALRAAKRNTYCRAVGGFVIVRMSDGSIDWFPTGQTPNRNGEPDRGAVILGKWHWNYRRWSRIG
Ga0308403_100138211F012676AGGAGGMSTTIKIAAGWDGSPKALTHPEHGWVRFLETRGIAYATYLDEPPGWRIVVRDERRFTRALHALRKYGVYGICEWTYDIH
Ga0308403_10013822F002978GAGMSVRDWRVMLVPWADRRLWFIQARRGRRVVWGVVYDAGDPDSVALARRAIATLRAAGADCSALPSPLPGAPPGAPGA
Ga0308403_10013823F000642GGAGMQEMSVALALCAVGAAVWYMRRRDAGAGRVRGWLLLHDDLGGWRVLAASYGDAGIVADGVTYPASLPAVRAGRELIWIARCDAAALIEHQALERAREAAALASLWKGGGQWIDLLRVLGVVLPAAFAYFTWAQVSALQALVAQILTLVGER
Ga0308403_10013824F001381GAGMQYVIATLYVLVWLALAAAAALVLPRWVLPAALVQLAVAYVMLRSWLTAAGGDD
Ga0308403_10013825F000855GAGGVEWLEDFFSKIVSWVDELSASIHNGIIGWVNSLIDVWNGWMDALLHPAQAMPSVPELRWVVDWLGDIADYTRLMYMLVDYVAYASIVQQALTAQLTIVTIGLAFRAWLVLRRIVLVS
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