NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308403_1002543

Scaffold Ga0308403_1002543


Overview

Basic Information
Taxon OID3300031980 Open in IMG/M
Scaffold IDGa0308403_1002543 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5226
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F002978Metagenome / Metatranscriptome516Y
F069556Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0308403_10025431F069556N/AWHPHYHALVFIAPGLPYLTPVCVALSERWSQVAGAEWRADVRRVARDGVAAVARYLTTDGVAGASYEVASPAAKIPAGRSYPQLLYDYGRFRSSVDAALVFEYAAALHGAHHLTVSPRLRRLYDFVDPAAGWSEIADDDILALLNSDEWLSILNAGEDKNLLDEFSWRC
Ga0308403_10025436F000855GAGGMDWLEDFFSKVVSWLDERMANIYNAVVAFINVLVDVWNGWMDALLHPAQAIPSVPALRWVVDWLGDIADYTRLMYMLVDYVAYASIVQQALAAQLTIVTIGLAFRAWLVIRRVVLVS
Ga0308403_10025438F000642N/AMQTISIALAVCACAAAVWYMRRRDAGAGRVTGWLLLYDDVGGWRVLAASYGESGVVADGVTYPASLPAVRAGRELIWIARCESAALIEHRALERAREAAALASLWRGGGQWIDFLRVAGVVLPAAFAYFTWAQVAGLQALVAQILALVGER
Ga0308403_10025439F002978GAGMSVRDWRVTLKPWADRRLWFIQARCGGRVVWGVVYDAGDPESVSLARRAIATLRAAGADCSALPSPLPGAPPGAPGA
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