NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308403_1003410

Scaffold Ga0308403_1003410


Overview

Basic Information
Taxon OID3300031980 Open in IMG/M
Scaffold IDGa0308403_1003410 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4393
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002978Metagenome / Metatranscriptome516Y
F004024Metagenome / Metatranscriptome456N

Sequences

Protein IDFamilyRBSSequence
Ga0308403_10034102F000855GAGGMDWLEDFFSKVVSWFDERAANIYNAVVAFINVLVDVWNGWMDALLHPAQAMPSIPALRWVVDWLGGIVDYTRLMYMLVDYVAYASIVQQALTAQIGIVIVGLAFRAWLVIRRVVLVS
Ga0308403_10034103F001381GAGMMQYVIAALYVLVWLALAAAAALVLPRWTLPAALVQLAVAYVMLRSWLTAAAGGDD
Ga0308403_10034104F000642AGGAGVQEISIALALCAVGAAIWYMRRRDAGAGRVRGWLLLYDDVGGWRVLPAVYGDAGIVADGVTYPASLPALRAGRELVWIARCDAAALIEHQALERAREAAALASLWRGGGQWIDFLRVAGVVLPAAFAYFTWAQVSALQALVAQILALVGER
Ga0308403_10034105F002978AGGVSDLRDWRVTVVPWADRRLWFVQARRGRRVVWGVVYDAADPESVSLARRAVATLRAAGADCSALPSPLPGAPGPGA
Ga0308403_10034107F004024AGGAMPSERDYLRQPSLGDDDMMFLDARATLAAALSRAVVGYSDSRVRALAWLSIATPRLYDRIAPLIEASAIRQSPGASRTLRDALRALSLEEYVRRRDERRER
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