NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308403_1004007

Scaffold Ga0308403_1004007


Overview

Basic Information
Taxon OID3300031980 Open in IMG/M
Scaffold IDGa0308403_1004007 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4003
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F008135Metagenome / Metatranscriptome338Y

Sequences

Protein IDFamilyRBSSequence
Ga0308403_10040074F002372AGGGGGMPTRREDSLWSVVHRRASHLRALLDALDDVDMSIAYELHYYPYAIVELLRVREDVPPVVLRSAYVSANRQWERHSEFTLRVVEAALQLVHEYRADPSLGGSDSWA
Ga0308403_10040075F002795GGAGGMATDNRLVLRGMVAAYREFVSRKDGRLFRIVTVFGDLMVGESVICTVDGYDVFVDTPGYARGEMVELPARLQFLRDGSGRPVIRLCVDEGVR
Ga0308403_10040076F008135N/AMRAMNDPRTERLFVSAGTSIARVLDARQRHAVALALEVCWYIVAALPPDDELTFGDMVRLLRWFVTGFREADDGDG
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