NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308403_1004873

Scaffold Ga0308403_1004873


Overview

Basic Information
Taxon OID3300031980 Open in IMG/M
Scaffold IDGa0308403_1004873 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3592
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005028Metagenome / Metatranscriptome414Y
F008499Metagenome / Metatranscriptome332Y
F018115Metagenome / Metatranscriptome236Y
F076715Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0308403_10048734F008499AGGAMKCRSKSEPRWKRKEREALKALQALFGRVSDPSLARLLSSTGRVGHLTRFGVDGFVGDNPGFAVEVKARRKMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMLPRRVLDELVGKERKDE
Ga0308403_10048735F018115AGGAGMSDEAERFVRWYAHLAEDAPLDRHAARALLRRALADREALAEYLLEHECAPSLLGEFIYRHWNDALSDAARGASLRLASRTLRALDCLEERDRWAVLEWLQRGVVPSARILRRLCEEIND
Ga0308403_10048736F005028AGGAGMRDDDLRAAMSFFAERLRDAEIDETRLLRWTRHKLRNDAQAVAELMLTVGYRPTFIRYFLRYHIPTINESAAVGETYTDPDATDAHLGLCWRLDEDVLTVLSDLHRAAKRLRQPYRDLAAVCLKWGYVHETVVQLLAKTPERKAKNVVEN
Ga0308403_10048737F076715AGGAMWWKIEEVPHQELEDWERAFLRCENRAKRDPMSRAVGVFVIFVREGGTRPEYTPGDKAPDGAYLVGK
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