NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308403_1005721

Scaffold Ga0308403_1005721


Overview

Basic Information
Taxon OID3300031980 Open in IMG/M
Scaffold IDGa0308403_1005721 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3271
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F059995Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0308403_10057211F059995N/AASYEVASPAAKVSSGRSYTQLLYDYGRFRSSVDAALVFEYAAALHGVHHLTVSPRLRKLYDFTDPASGWSQIADEDVLALLNSGEWLSILNAGEERNLLDDLSRSW
Ga0308403_10057217F000855GAGGMDWLEDFWSKVVGWLDELSAAVHNGIIEWVNSLINVWNGWMDSLLHPAQAMPSSPQLRWIVDWLGGIADYTRLMYLLVDYVAYAWIVQQALTAQIGIVIVGLGFRAWLVIRRVVLVS
Ga0308403_10057218F001381GAGMQYVIATLYVLLWLALAAAAALWLPRWALPVALVQLAMAYVLVRSSLLGAVDADDER
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.