NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308403_1017051

Scaffold Ga0308403_1017051


Overview

Basic Information
Taxon OID3300031980 Open in IMG/M
Scaffold IDGa0308403_1017051 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1719
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004307Metagenome / Metatranscriptome444Y
F005028Metagenome / Metatranscriptome414Y
F008499Metagenome / Metatranscriptome332Y

Sequences

Protein IDFamilyRBSSequence
Ga0308403_10170511F005028GGAMRDDDLRAAMSFFAERLRGVDGDETRLLRWTRHKLRNDAQAVAELMLTVGYRPTYIRYFLRYHVPTLRESAAVGETYTDPDATDAHLGLCWRLDEEVLTVLSDLHAAAKRLRQPYRDLAAVCLKWGYVHETVVQLLVKELERKHRNVVED
Ga0308403_10170512F008499GGAMKKSRSEPRWKRKEREALKALQALFGRVSDPSLARLLTSTGRVGHLTRFGVDGFVGNSPGFAVEVKARRKMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKNKGDGDA
Ga0308403_10170513F004307AGGAGMFKELIHNGSRSERPELNGAYTAIFRGVSQRQRPTFETRNDPEPTFEDVFVFEFEVIDADFDEPIRVSKWVRKPARLSHPGKSGKVTNLYKTLAALYGVVQMSDAQLENAEEFVEKEAIGRQYQLTLETKPSGWVEIVHIAPVRKARNRKKEEDEEVPF
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