Scaffold Ga0307409_100102025

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307409_100102025

Scaffold Ga0307409_100102025

Overview

Basic Information
Taxon OID	3300031995 Open in IMG/M
Scaffold ID	Ga0307409_100102025 Open in IMG/M
Source Dataset Name	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2382
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.5	Long. (^o)	-121.7	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F083214	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307409_1001020253	F083214	N/A	VVLPGQIWRLAWPVQLAAVLTLGWLVWSATDYVAARLRNLGPARLLAGALPILLLVALTVAAMPQARQGMESIQAHREASREAGFYPSDPIFPWFRDEIRSPVVVLAPDIQSARIPAYSYEANVVSRRGGLVLRVLPELQKRAPGQIEVPQGSLDVREFFSGTTHQQGVEILRRNNVDYVMVAKDSQLTGSLDRLSGFTPVKTPSERYDLYAVDLQKLA

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