NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307409_100605519

Scaffold Ga0307409_100605519


Overview

Basic Information
Taxon OID3300031995 Open in IMG/M
Scaffold IDGa0307409_100605519 Open in IMG/M
Source Dataset NameMaize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1083
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5Long. (o)-121.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006339Metagenome375Y
F042552Metagenome158N
F066519Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0307409_1006055192F006339GGAGGMHNDQSAQDARTLLVALSSNHPEARRASPFVGMDRPFSPSWADAEQAGLDRVRRDAAIRWLMDNNMLEREEEAENQRAKGKEPPDDDYVYGSVFRITDSGRELLKEIWEEQRQL
Ga0307409_1006055193F042552GAGGMAQSCWKDNDTVQERREQLLEELRKAEQARELLRALEQNLSKEKSPDLAPHVRRLEQLAQSLPDDHMVRLVIESALGPSEYGNVSRARSAVEGEISTLQGALRYKAK
Ga0307409_1006055194F066519AGGAGLSEEQQRQRVRELVRKQTGLDWPELQVGEIEKAMSSVTLFYWGTKEE
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