NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315278_10146161

Scaffold Ga0315278_10146161


Overview

Basic Information
Taxon OID3300031997 Open in IMG/M
Scaffold IDGa0315278_10146161 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2414
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5094Long. (o)-110.5094Alt. (m)Depth (m)88
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003521Metagenome / Metatranscriptome481Y
F011751Metagenome / Metatranscriptome287Y

Sequences

Protein IDFamilyRBSSequence
Ga0315278_101461611F011751N/AVKNCAIGLRDVIYIVWKTLVQYSDDYNIQQLANACKQGKPFMDAISIENFEFIDRRMINIDLALGFLSDENRLTRQQLITQTQGAFSASMMQIDPSVPELFAKLRRPFEDTLRVLGVKDVDSYLPTLEEAAKIAQAKSQQPPSPEQQEISSKVAVNTAKAKDTEANTAFTVRKTQDMDTDDYFEALAAKRGKLSANEID
Ga0315278_101461612F003521AGGAMKSLVLNIRSYFNKRTKLIDTRKEADVTRKTLVIENGEKAARLMANEDFALMFNLYRFNMLERLEDSKDDSDRISNAHYVAGVRDFIYFVEQQEYLGKVAVKAQP
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