NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315274_10003753

Scaffold Ga0315274_10003753


Overview

Basic Information
Taxon OID3300031999 Open in IMG/M
Scaffold IDGa0315274_10003753 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22553
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (30.30%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5119Long. (o)-110.3577Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045539Metagenome152Y
F093345Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0315274_1000375331F093345N/AMGIDYNYIANQIVLIFTAGRPTTEGIDVREVEALVRQAAASVGRQEYFENYKAENQSTVNGQWLVTYQLPLATDAITGYKYAALSENYLPLPKNRGVVRVAIADSTYKGKKQIAFINFENYENLRGGSTIKFAGSYFYSLAAKKVYVLPACEAVIKFQNINVTQAVANDATLNEAQALLIIQQVMPIMIQRYSRRADMDTDANPNAL
Ga0315274_100037535F045539GGAMWKWHHILLKVASLQVRFLPSSQNNIMAKHAALPFHFYVNVHNSFLGPNMPSGTTKAIWHGIYCREYQTLSCHVFLESGAHWSGLPLHALSTTEEFRYGSEILMPWAGMGEEIEAVYMPFLEGLEAKPMIDPGKPNGRHTGIIIDWKDGYSRYPAEHKPLNLVHLDSGQFVLFPNNYVVYKEKHFVDEAAKENMKHYRRGEEIYWEK
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