NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306922_10103284

Scaffold Ga0306922_10103284


Overview

Basic Information
Taxon OID3300032001 Open in IMG/M
Scaffold IDGa0306922_10103284 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3016
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004800Metagenome / Metatranscriptome423Y
F006239Metagenome / Metatranscriptome378Y

Sequences

Protein IDFamilyRBSSequence
Ga0306922_101032841F006239N/AKLFLYDLDDLHQLDFIHNQQMAKAIERLRVLSTTIVQQRESWKVRALMAEAQLLEATAKTSNNGSRQNVSDVRYASLKRYLAKRFHPDFAPGQGIEKVVRNEIFKEIWKEIDRIDQAVSATRFATARSSWAA
Ga0306922_101032842F004800N/AMATMLPKVLEIERRQLADYARVDYAITKGEDEIAALEELWLGPNELRRETSVVRDRTVLAVREVRNNMAKRAITAKNMQGSLVESLRQRSRFAVVDSVDASLRARCFASLECVPTLTLICHFIDAIKAGDLARAESVRFEFQTREDRHEYAVTSRAIFAQFTPSEPADILKRIAKICRAAEMADARVVDLFRRCDRIFVSHRVEPADRGPNRSRAFDISLLGARPAPPREHPIVSVRSAFAA
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